STRINGSTRING
Nmar_0042 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0042" - PFAM: protein of unknown function ATP binding in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0042PFAM- protein of unknown function ATP binding; KEGG- sso-SSO1046 hypothetical protein (252 aa)    
Predicted Functional Partners:
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily (307 aa)
              0.860
Nmar_0040
PFAM- ExsB family protein; KEGG- ape-APE_1470.1 hypothetical protein (224 aa)
              0.845
rpl44e
50S ribosomal protein L44e; Binds to the 23S rRNA (93 aa)
 
          0.779
Nmar_0077
PFAM- RNA binding S1 domain protein; translation initiation factor 2, alpha subunit; KEGG- rci-LRC294 translation initiation factor 2, alpha subunit (265 aa)
 
      0.649
Nmar_0347
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1115 aa)
 
 
 
  0.645
secY
Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (476 aa)
   
 
  0.629
Nmar_1760
PFAM- Dual specificity protein phosphatase; SMART- Protein-tyrosine phosphatase, catalytic; KEGG- dre-436735 zgc-92902 (169 aa)
 
 
 
  0.618
Nmar_0044
PFAM- short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG- bat-BAS4042 oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family (264 aa)
 
 
 
  0.616
nep1
Ribosomal RNA small subunit methyltransferase Nep1; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA (222 aa)
   
 
  0.605
Nmar_0043
PFAM- conserved hypothetical protein; KEGG- mma-MM_0377 integral membrane protein (363 aa)
              0.600
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
Server load: low (10%) [HD]