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Nmar_0055 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0055" - PFAM: protein of unknown function DUF814 in Nitrosopumilus maritimus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Nmar_0055PFAM- protein of unknown function DUF814; KEGG- pab-PAB1903 hypothetical protein (652 aa)    
Predicted Functional Partners:
pelA
Protein pelota homolog; May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity (349 aa)
 
 
  0.779
Nmar_0056
annotation not available (158 aa)
              0.773
Nmar_0295
ABC transporter related; PFAM- 4Fe-4S ferredoxin iron-sulfur binding domain protein; ABC transporter related; metal-binding domain in RNase L inhibitor, RLI; SMART- AAA ATPase; KEGG- pab-PAB0824 RNase l inhibitor (595 aa)
 
     
  0.718
Nmar_0391
PFAM- Ribosomal protein L32e; KEGG- pai-PAE2099 ribosomal protein L32 (134 aa)
   
      0.678
Nmar_1008
D-alanine--D-alanine ligase; PFAM- peptidase M20; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; KEGG- amt-Amet_3744 D-alanine--D-alanine ligase domain protein (743 aa)
   
   
  0.664
rpl24
50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (168 aa)
 
 
  0.629
Nmar_0216
PFAM- AMMECR1 domain protein; KEGG- mst-Msp_0403 hypothetical protein (205 aa)
 
   
  0.602
rpl2
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (244 aa)
   
 
 
  0.598
rpl37e
50S ribosomal protein L37e; Binds to the 23S rRNA (55 aa)
   
      0.589
rpl6
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (185 aa)
   
 
      0.577
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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