Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
PFAM- Ribosomal protein S6e; KEGG- hwa-HQ1070A ribosomal protein S6.eR; Belongs to the eukaryotic ribosomal protein eS6 family (137 aa)
Predicted Functional Partners:
PFAM- Ribosomal protein S28e; KEGG- smr-Smar_0826 ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family (70 aa)
50S ribosomal protein L19e; Binds to the 23S rRNA (151 aa)
KEGG- tpe-Tpen_0358 ribosomal protein S8e (127 aa)
PFAM- ribosomal protein L30; KEGG- smr-Smar_1040 ribosomal protein L30P (155 aa)
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (160 aa)
annotation not available (147 aa)
50S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome (88 aa)
PFAM- Ribosomal protein L15e; KEGG- smr-Smar_0852 ribosomal protein L15e (154 aa)
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit (150 aa)
30S ribosomal protein S3; Binds the lower part of the 30S subunit head (251 aa)
Your Current Organism:
NCBI taxonomy Id: 436308 Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1