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Nmar_0086 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0086" - PFAM: Like-Sm ribonucleoprotein core in Nitrosopumilus maritimus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
Nmar_0086PFAM- Like-Sm ribonucleoprotein core; SMART- Sm-family ribonucleoprotein; KEGG- mse-Msed_0230 like-Sm ribonucleoprotein, core (81 aa)    
Predicted Functional Partners:
Nmar_0085
PFAM- S-adenosylmethionine synthetase; KEGG- azo-azo0589 methionine adenosyltransferase (388 aa)
              0.889
Nmar_0087
RecA/RadA recombinase-like protein; KEGG- tac-Ta1104 probable DNA repair protein Rad51 (RadA) (217 aa)
         
  0.651
rrp41
Exosome complex component Rrp41; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3’->5’ exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails (244 aa)
   
 
  0.636
rrp42
Exosome complex component Rrp42; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site (272 aa)
   
 
  0.617
rrp4
Exosome complex component Rrp4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome (226 aa)
   
   
  0.610
Nmar_1391
PFAM- Pre-mRNA processing ribonucleoprotein, binding domain protein; NOSIC domain protein; KEGG- smr-Smar_1256 pre-mRNA processing ribonucleoprotein, binding region (470 aa)
   
 
  0.595
flpA
Fibrillarin-like rRNA/tRNA 2’-O-methyltransferase; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2’-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA (224 aa)
   
 
 
  0.595
rpl7ae
50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C’/D’ sRNAs (128 aa)
   
 
  0.568
rpoK
DNA-directed RNA polymerase subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (182 aa)
   
        0.568
fen
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. Binds the unpaired 3’-DNA end and kinks the DNA to facilitate 5’ cleavage specificity. Cleaves one nucleotide into the double- stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] (340 aa)
   
        0.505
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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