STRINGSTRING
Nmar_0173 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0173" - KEGG: tpt:Tpet_1580 short-chain dehydrogenase/reductase SDR in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0173KEGG- tpt-Tpet_1580 short-chain dehydrogenase/reductase SDR (215 aa)    
Predicted Functional Partners:
Nmar_0634
PFAM- short-chain dehydrogenase/reductase SDR; KEGG- bha-BH0932 3-oxoacyl-(acyl-carrier protein) reductase (253 aa)
   
   
 
0.831
Nmar_0174
annotation not available (79 aa)
              0.765
Nmar_0044
PFAM- short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG- bat-BAS4042 oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family (264 aa)
 
 
  0.586
Nmar_0175
annotation not available (197 aa)
              0.537
Nmar_0299
PFAM- ribulose-phosphate 3-epimerase; Transketolase domain protein; KEGG- pth-PTH_2750 transketolase, N-terminal subunit (555 aa)
 
     
  0.484
Nmar_1008
D-alanine--D-alanine ligase; PFAM- peptidase M20; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; KEGG- amt-Amet_3744 D-alanine--D-alanine ligase domain protein (743 aa)
 
 
  0.455
Nmar_0994
PFAM- alpha/beta hydrolase fold; KEGG- mva-Mvan_2912 alpha/beta hydrolase fold (281 aa)
 
 
  0.449
Nmar_0546
Aminotransferase; PFAM- Chorismate mutase; aminotransferase class I and II; KEGG- tpt-Tpet_1516 aminotransferase, class I and II (456 aa)
 
   
  0.440
lysJ
Putative [LysW]-aminoadipate semialdehyde/glutamate semialdehyde transaminase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily (393 aa)
   
     
  0.405
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
Server load: low (11%) [HD]