STRINGSTRING
Nmar_0256 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0256" - KEGG: ter:Tery_4268 putative methylisocitrate lyase in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0256KEGG- ter-Tery_4268 putative methylisocitrate lyase (288 aa)    
Predicted Functional Partners:
Nmar_0257
PFAM- transcriptional regulator PadR family protein; KEGG- tac-Ta0868m predicted transcription regulator (169 aa)
              0.491
Nmar_0258
KEGG- chy-CHY_1373 succinate dehydrogenase; TIGRFAM- succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM- fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase (570 aa)
   
   
  0.489
Nmar_1099
KEGG- sfu-Sfum_2105 citrate (Si)-synthase; TIGRFAM- 2-methylcitrate synthase/citrate synthase II; PFAM- Citrate synthase (387 aa)
   
   
  0.487
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA (499 aa)
     
   
  0.434
Nmar_0662
KEGG- hhe-HH1439 hypothetical protein (263 aa)
            0.434
Nmar_0259
KEGG- chy-CHY_1372 hypothetical protein (143 aa)
         
  0.433
Nmar_1482
Aconitate hydratase; KEGG- bba-Bd2784 3-isopropylmalate isomerase; TIGRFAM- aconitate hydratase; PFAM- aconitate hydratase domain protein (754 aa)
   
 
  0.432
Nmar_0299
PFAM- ribulose-phosphate 3-epimerase; Transketolase domain protein; KEGG- pth-PTH_2750 transketolase, N-terminal subunit (555 aa)
         
  0.421
Nmar_0261
KEGG- hbu-Hbut_0157 succinate dehydrogenase/fumarate reductase iron-sulfur protein; TIGRFAM- succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM- ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein (249 aa)
         
  0.419
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
Server load: low (13%) [HD]