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rps4 protein (Nitrosopumilus maritimus) - STRING interaction network
"rps4" - 30S ribosomal protein S4 in Nitrosopumilus maritimus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rps430S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (201 aa)    
Predicted Functional Partners:
rps13
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement (194 aa)
 
 
  0.999
rpl13
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (154 aa)
 
 
  0.999
rps2
PFAM- ribosomal protein S2; KEGG- tpe-Tpen_0274 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family (207 aa)
 
 
  0.999
rps11
30S ribosomal protein S11; Located on the platform of the 30S subunit (108 aa)
 
 
  0.999
Nmar_0449
PFAM- ribosomal protein L16; KEGG- hbu-Hbut_1653 50S ribosomal protein L10e (169 aa)
 
 
  0.999
rps17
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (107 aa)
 
 
  0.999
Nmar_0425
PFAM- ribosomal protein S9; KEGG- mth-MTH39 30S ribosomal protein S9/L13; Belongs to the universal ribosomal protein uS9 family (149 aa)
   
 
  0.999
rpl6
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (185 aa)
 
 
  0.999
rpl3
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (331 aa)
 
 
  0.999
rpl22
50S ribosomal protein L22; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (152 aa)
 
 
  0.999
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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