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Nmar_0352 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0352" - PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45 in Nitrosopumilus maritimus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0352PFAM- ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG- sai-Saci_0690 50S ribosomal protein L30E (107 aa)    
Predicted Functional Partners:
rpl19e
50S ribosomal protein L19e; Binds to the 23S rRNA (151 aa)
   
 
  0.999
rpl18e
KEGG- mae-Maeo_1097 ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL18 family (115 aa)
   
 
  0.999
Nmar_0391
PFAM- Ribosomal protein L32e; KEGG- pai-PAE2099 ribosomal protein L32 (134 aa)
     
 
  0.999
rps28e
PFAM- Ribosomal protein S28e; KEGG- smr-Smar_0826 ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family (70 aa)
   
 
  0.999
rps17e
KEGG- msi-Msm_0833 ribosomal protein S17a; Belongs to the eukaryotic ribosomal protein eS17 family (129 aa)
   
 
  0.999
rpl21e
PFAM- Ribosomal protein L21e; KEGG- hbu-Hbut_1660 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family (99 aa)
   
 
  0.999
rpl31e
PFAM- Ribosomal protein L31e; KEGG- aor-AO090011000451 predicted protein Pfam- Collagen PROSITE- GLN_RICH GLU_RICH GLY_RICH LYS_RICH; Belongs to the ribosomal protein L31e family (187 aa)
   
 
  0.999
rpl6
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (185 aa)
   
 
  0.999
rpl44e
50S ribosomal protein L44e; Binds to the 23S rRNA (93 aa)
   
 
  0.999
rps3ae
PFAM- ribosomal protein S3Ae; KEGG- smr-Smar_0844 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family (203 aa)
     
 
  0.999
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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