STRINGSTRING
Nmar_0379 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0379" - annotation not available in Nitrosopumilus maritimus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0379annotation not available (145 aa)    
Predicted Functional Partners:
Nmar_0380
KEGG- dge-Dgeo_2552 hypothetical protein (357 aa)
              0.845
Nmar_0378
annotation not available (71 aa)
              0.845
rpl1
50S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release (220 aa)
              0.612
rpl10
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (288 aa)
              0.612
Nmar_0377
KEGG- tva-TVAG_480920 hypothetical protein PROSITE- GLU_RICH LYS_RICH SER_RICH (295 aa)
              0.597
Nmar_0383
PFAM- regulatory protein AsnC/Lrp family; KEGG- mse-Msed_0688 putative transcriptional regulator, AsnC family (145 aa)
              0.403
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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