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secY protein (Nitrosopumilus maritimus) - STRING interaction network
"secY" - Protein translocase subunit SecY in Nitrosopumilus maritimus
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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secYProtein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (476 aa)    
Predicted Functional Partners:
rpl15
50S ribosomal protein L15; Binds to the 23S rRNA (154 aa)
 
   
  0.968
ftsY
Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) (513 aa)
   
 
  0.961
adkA
KEGG- mja-MJ0479 adenylate kinase; Belongs to the archaeal adenylate kinase family (192 aa)
         
  0.952
Nmar_0399
TIGRFAM- ribosomal protein S5; PFAM- ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG- tpe-Tpen_0236 ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family (238 aa)
 
        0.945
truB
Probable tRNA pseudouridine synthase B; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs (332 aa)
 
          0.944
rpl18
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (160 aa)
 
        0.939
cmk
KEGG- sto-ST0408 cytidylate kinase; Belongs to the cytidylate kinase family. Type 2 subfamily (186 aa)
              0.922
Nmar_0404
Membrane protein-like protein; KEGG- mth-MTH28 hypothetical protein (207 aa)
              0.922
rpl30
PFAM- ribosomal protein L30; KEGG- smr-Smar_1040 ribosomal protein L30P (155 aa)
              0.922
srp54
Signal recognition particle 54 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY; Belongs to the GTP-binding SRP family. SRP54 subfamily (442 aa)
     
 
  0.911
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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