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rrp4 protein (Nitrosopumilus maritimus) - STRING interaction network
"rrp4" - Exosome complex component Rrp4 in Nitrosopumilus maritimus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rrp4Exosome complex component Rrp4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome (226 aa)    
Predicted Functional Partners:
rrp41
Exosome complex component Rrp41; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3’->5’ exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails (244 aa)
 
  0.999
rrp42
Exosome complex component Rrp42; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site (272 aa)
 
 
  0.999
csl4
Exosome complex component Csl4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (183 aa)
   
 
  0.965
Nmar_0430
PFAM- Shwachman-Bodian-Diamond syndrome proteins; KEGG- iho-Igni_0697 Shwachman-Bodian-Diamond syndrome protein (228 aa)
 
        0.933
rpl37ae
50S ribosomal protein L37Ae; Binds to the 23S rRNA (70 aa)
   
        0.927
Nmar_0435
annotation not available (81 aa)
              0.922
pfdB
Prefoldin subunit beta; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding (129 aa)
   
   
  0.891
Nmar_0437
ERCC4 domain protein; PFAM- helix-hairpin-helix motif; ERCC4 domain protein; SMART- Helix-hairpin-helix DNA-binding class 1; KEGG- pho-PH1896m ERCC4-like helicase/ERCC4-type nuclease (228 aa)
              0.811
nep1
Ribosomal RNA small subunit methyltransferase Nep1; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA (222 aa)
   
      0.766
dnaG
DNA primase DnaG; SMART- Toprim sub domain protein; KEGG- sso-SSO0079 Bacterial-like DNA primase (380 aa)
   
     
  0.740
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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