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rrp41 protein (Nitrosopumilus maritimus) - STRING interaction network
"rrp41" - Exosome complex component Rrp41 in Nitrosopumilus maritimus
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
rrp41Exosome complex component Rrp41; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3’->5’ exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails (244 aa)    
Predicted Functional Partners:
rrp4
Exosome complex component Rrp4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome (226 aa)
 
  0.999
rrp42
Exosome complex component Rrp42; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site (272 aa)
 
 
0.999
csl4
Exosome complex component Csl4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (183 aa)
   
 
  0.994
Nmar_0430
PFAM- Shwachman-Bodian-Diamond syndrome proteins; KEGG- iho-Igni_0697 Shwachman-Bodian-Diamond syndrome protein (228 aa)
 
   
  0.947
rpl37ae
50S ribosomal protein L37Ae; Binds to the 23S rRNA (70 aa)
   
      0.929
Nmar_0435
annotation not available (81 aa)
              0.922
Nmar_1530
TIGRFAM- non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM- Ham1 family protein; KEGG- mka-MK1594 xanthosine triphosphate pyrophosphatase; Belongs to the HAM1 NTPase family (188 aa)
 
        0.903
pfdB
Prefoldin subunit beta; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding (129 aa)
   
   
  0.890
Nmar_0437
ERCC4 domain protein; PFAM- helix-hairpin-helix motif; ERCC4 domain protein; SMART- Helix-hairpin-helix DNA-binding class 1; KEGG- pho-PH1896m ERCC4-like helicase/ERCC4-type nuclease (228 aa)
              0.811
priS
DNA primase small subunit PriS; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthe [...] (373 aa)
           
  0.801
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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