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Nmar_0517 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0517" - PFAM: Zinc finger TFIIB-type domain protein in Nitrosopumilus maritimus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Nmar_0517PFAM- Zinc finger TFIIB-type domain protein; Transcription factor TFIIB cyclin-related; KEGG- mst-Msp_1360 transcription initiation factor IIB (TFIIB) (318 aa)    
Predicted Functional Partners:
Nmar_0518
annotation not available (82 aa)
              0.917
rps8e
KEGG- tpe-Tpen_0358 ribosomal protein S8e (127 aa)
 
      0.823
rpoA2
DNA-directed RNA polymerase subunit A’’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1263 aa)
   
 
  0.804
Nmar_1519
TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (187 aa)
   
 
  0.760
Nmar_0598
TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (186 aa)
   
 
  0.755
Nmar_1235
TIGRFAM- DNA-directed RNA polymerase; PFAM- RNA binding S1 domain protein; RNA polymerase Rpb7 domain protein; KEGG- mja-MJ0397 DNA-directed RNA polymerase subunit E’ (198 aa)
   
 
  0.726
Nmar_0428
PFAM- RNA polymerase dimerisation; RNA polymerase insert; SMART- RNA polymerase RpoA/D/Rpb3-type; KEGG- mst-Msp_0868 RpoD (221 aa)
   
 
  0.639
rpoH
DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (83 aa)
   
 
  0.636
Nmar_0519
KEGG- iho-Igni_0768 signal recognition particle, subunit SRP19 (SRP19) (99 aa)
   
        0.622
tfe
Transcription factor E; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems [...] (171 aa)
   
 
  0.612
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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