STRINGSTRING
Nmar_0561 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0561" - PFAM: major intrinsic protein in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0561PFAM- major intrinsic protein; KEGG- mbn-Mboo_0011 MIP family channel protein (237 aa)    
Predicted Functional Partners:
Nmar_0563
annotation not available (272 aa)
              0.713
Nmar_0562
annotation not available (141 aa)
              0.713
Nmar_0560
PFAM- alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG- lic-LIC10732 bacterioferritin comigratory protein (154 aa)
   
   
  0.612
Nmar_1792
TIGRFAM- thermosome; PFAM- chaperonin Cpn60/TCP-1; KEGG- mbn-Mboo_0199 thermosome (570 aa)
         
  0.522
Nmar_1577
TIGRFAM- thermosome; PFAM- chaperonin Cpn60/TCP-1; KEGG- pfu-PF1974 thermosome, single subunit (540 aa)
         
  0.522
pcn
DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication (248 aa)
     
   
  0.455
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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