STRINGSTRING
Nmar_0622 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0622" - PFAM: translation initiation factor SUI1 in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0622PFAM- translation initiation factor SUI1; KEGG- rci-RRC313 translation initiation factor (SUI1 family); Belongs to the SUI1 family (102 aa)    
Predicted Functional Partners:
rps3
30S ribosomal protein S3; Binds the lower part of the 30S subunit head (251 aa)
 
 
  0.969
rps8
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (130 aa)
 
      0.967
rps17
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (107 aa)
 
 
  0.965
Nmar_0796
PFAM- ribosomal protein S14; KEGG- mka-MK1222 ribosomal protein S14 (59 aa)
   
 
  0.962
rps6e
PFAM- Ribosomal protein S6e; KEGG- hwa-HQ1070A ribosomal protein S6.eR; Belongs to the eukaryotic ribosomal protein eS6 family (137 aa)
   
 
  0.957
rps28e
PFAM- Ribosomal protein S28e; KEGG- smr-Smar_0826 ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family (70 aa)
   
 
  0.944
rps17e
KEGG- msi-Msm_0833 ribosomal protein S17a; Belongs to the eukaryotic ribosomal protein eS17 family (129 aa)
     
 
  0.940
Nmar_0930
KEGG- pas-Pars_0790 small subunit ribosomal protein S25e (103 aa)
     
 
  0.932
rps2
PFAM- ribosomal protein S2; KEGG- tpe-Tpen_0274 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family (207 aa)
   
 
  0.931
rpl7ae
50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C’/D’ sRNAs (128 aa)
   
      0.930
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
Server load: low (12%) [HD]