STRINGSTRING
Nmar_0695 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0695" - PFAM: PUA domain containing protein in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0695PFAM- PUA domain containing protein; KEGG- iho-Igni_0022 RNA-binding protein, containing PUA domain (158 aa)    
Predicted Functional Partners:
rps12
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (145 aa)
   
 
  0.934
rps13
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement (194 aa)
     
      0.918
rps4e
PFAM- Ribosomal protein S4E domain protein; Ribosomal protein S4E, central domain protein; KEGG- smr-Smar_1031 ribosomal protein S4E, central; Belongs to the eukaryotic ribosomal protein eS4 family (238 aa)
   
      0.884
rps10
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (102 aa)
     
      0.872
Nmar_0622
PFAM- translation initiation factor SUI1; KEGG- rci-RRC313 translation initiation factor (SUI1 family); Belongs to the SUI1 family (102 aa)
     
 
  0.858
rps3ae
PFAM- ribosomal protein S3Ae; KEGG- smr-Smar_0844 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family (203 aa)
   
      0.851
Nmar_0696
PFAM- homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG- mja-MJ1602 homoserine dehydrogenase (336 aa)
              0.848
rps17
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (107 aa)
   
      0.840
rps28e
PFAM- Ribosomal protein S28e; KEGG- smr-Smar_0826 ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family (70 aa)
   
      0.820
rps15
PFAM- ribosomal protein S15; Ribosomal S13S15 domain protein; KEGG- pis-Pisl_0780 ribosomal S13S15-like protein (149 aa)
   
      0.786
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
Server load: low (14%) [HD]