STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0825PFAM: band 7 protein; KEGG: rrs:RoseRS_2924 band 7 protein. (287 aa)    
Predicted Functional Partners:
Nmar_1635
PFAM: Rhomboid family protein; KEGG: cya:CYA_1911 peptidase, S54 (rhomboid) family.
   
 0.852
hflX
GTP1/OBG protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
  
 0.701
dnaK
Chaperone protein DnaK; Acts as a chaperone.
  
 0.670
Nmar_0042
PFAM: protein of unknown function ATP binding; KEGG: sso:SSO1046 hypothetical protein.
   
 0.592
Nmar_0824
Hypothetical protein.
  
    0.589
Nmar_0278
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: sto:ST2217 hypothetical NADH-plastoquinone oxidoreductase subunit 5.
  
 
 0.499
Nmar_0299
PFAM: ribulose-phosphate 3-epimerase; Transketolase domain protein; KEGG: pth:PTH_2750 transketolase, N-terminal subunit.
  
    0.492
Nmar_0095
GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...]
  
 
 0.464
Nmar_1262
PFAM: Tubulin/FtsZ GTPase; KEGG: mka:MK0821 ftsZ GTPase involved in cell division.
   
  
 0.462
rps7
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.437
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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