Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Peptide chain release factor subunit 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA (426 aa)
Predicted Functional Partners:
ABC transporter related; PFAM- 4Fe-4S ferredoxin iron-sulfur binding domain protein; ABC transporter related; metal-binding domain in RNase L inhibitor, RLI; SMART- AAA ATPase; KEGG- pab-PAB0824 RNase l inhibitor (595 aa)
PFAM- Ribosomal protein L15e; KEGG- smr-Smar_0852 ribosomal protein L15e (154 aa)
PFAM- Ribosomal protein S4E domain protein; Ribosomal protein S4E, central domain protein; KEGG- smr-Smar_1031 ribosomal protein S4E, central; Belongs to the eukaryotic ribosomal protein eS4 family (238 aa)
PFAM- Ribosomal protein L32e; KEGG- pai-PAE2099 ribosomal protein L32 (134 aa)
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (288 aa)
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (432 aa)
50S ribosomal protein L19e; Binds to the 23S rRNA (151 aa)
PFAM- ribosomal protein S3Ae; KEGG- smr-Smar_0844 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family (203 aa)
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit (150 aa)
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (102 aa)
Your Current Organism:
NCBI taxonomy Id: 436308 Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1