STRINGSTRING
Nmar_0939 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0939" - KEGG: sus:Acid_1194 hypothetical protein in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_0939KEGG- sus-Acid_1194 hypothetical protein (133 aa)    
Predicted Functional Partners:
Nmar_0941
PFAM- pyridoxamine 5’-phosphate oxidase-related FMN-binding (134 aa)
              0.613
Nmar_0940
annotation not available (96 aa)
              0.613
Nmar_0937
PFAM- aldo/keto reductase; KEGG- tet-TTHERM_00529610 hypothetical protein Pfam- Aldo_ket_red (366 aa)
 
          0.461
Nmar_0938
PFAM- UbiA prenyltransferase; KEGG- sfu-Sfum_0412 UbiA prenyltransferase (296 aa)
              0.455
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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