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Nmar_0944 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0944" - PFAM: helicase domain protein in Nitrosopumilus maritimus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Nmar_0944PFAM- helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART- DEAD-like helicases; KEGG- tko-TK1021 helicase-associated endonuclease for fork-structured DNA (502 aa)    
Predicted Functional Partners:
Nmar_0437
ERCC4 domain protein; PFAM- helix-hairpin-helix motif; ERCC4 domain protein; SMART- Helix-hairpin-helix DNA-binding class 1; KEGG- pho-PH1896m ERCC4-like helicase/ERCC4-type nuclease (228 aa)
 
 
  0.961
fen
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. Binds the unpaired 3’-DNA end and kinks the DNA to facilitate 5’ cleavage specificity. Cleaves one nucleotide into the double- stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] (340 aa)
   
 
  0.774
radA
DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules (388 aa)
   
 
  0.715
Nmar_1632
PFAM- DNA topoisomerase type IA zn finger domain protein; KEGG- tvo-TVN0019 DNA topoisomerase I (152 aa)
   
 
  0.620
pcn
DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication (248 aa)
   
 
 
  0.607
Nmar_0089
PFAM- nucleic acid binding OB-fold tRNA/helicase-type; KEGG- mmp-MMP1032 replication protein A (466 aa)
   
 
  0.578
Nmar_0837
PFAM- Resolvase, Holliday junction-type (182 aa)
           
  0.575
Nmar_1103
TIGRFAM- excinuclease ABC, C subunit; PFAM- Excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; KEGG- mmp-MMP0728 excinuclease ABC subunit C (528 aa)
         
  0.574
rpl10
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (288 aa)
   
     
  0.564
Nmar_0945
annotation not available (81 aa)
              0.552
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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