STRINGSTRING
Nmar_0979 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_0979" - PFAM: Zinc finger TFIIB-type domain protein in Nitrosopumilus maritimus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Nmar_0979PFAM- Zinc finger TFIIB-type domain protein; Transcription factor TFIIB cyclin-related; SMART- Cyclin domain protein; KEGG- hwa-HQ1867A transcription initiation factor TFB (303 aa)    
Predicted Functional Partners:
rpoA2
DNA-directed RNA polymerase subunit A’’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1263 aa)
   
 
  0.804
Nmar_1519
TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (187 aa)
   
 
  0.766
Nmar_0598
TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (186 aa)
   
 
  0.756
Nmar_1235
TIGRFAM- DNA-directed RNA polymerase; PFAM- RNA binding S1 domain protein; RNA polymerase Rpb7 domain protein; KEGG- mja-MJ0397 DNA-directed RNA polymerase subunit E’ (198 aa)
   
 
  0.695
Nmar_0428
PFAM- RNA polymerase dimerisation; RNA polymerase insert; SMART- RNA polymerase RpoA/D/Rpb3-type; KEGG- mst-Msp_0868 RpoD (221 aa)
   
 
  0.690
Nmar_1756
PFAM- Transcription factor TFIIS; SMART- DNA-directed RNA polymerase, M15 kDa subunit; KEGG- mja-MJ1148 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family (105 aa)
   
 
  0.664
rpoH
DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (83 aa)
   
 
  0.627
Nmar_1412
PFAM- Translation initiation factor IF2/IF5; KEGG- pab-PAB0959 translation initiation factor aIF-2 beta subunit (140 aa)
   
      0.606
tfe
Transcription factor E; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems [...] (171 aa)
   
 
  0.604
Nmar_0430
PFAM- Shwachman-Bodian-Diamond syndrome proteins; KEGG- iho-Igni_0697 Shwachman-Bodian-Diamond syndrome protein (228 aa)
   
        0.591
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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