STRINGSTRING
Nmar_1121 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_1121" - PFAM: Ferritin Dps family protein in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_1121PFAM- Ferritin Dps family protein; KEGG- sso-SSO2079 antioxidant protein (195 aa)    
Predicted Functional Partners:
Nmar_1122
annotation not available (109 aa)
              0.568
sucD
Succinate--CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit (305 aa)
              0.483
Nmar_1123
Succinate--CoA ligase (ADP-forming); PFAM- ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG- iho-Igni_0086 succinyl-CoA synthetase (ADP-forming) beta subunit (368 aa)
              0.483
Nmar_1120
TIGRFAM- isoleucyl-tRNA synthetase; KEGG- hbu-Hbut_1425 isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family (1065 aa)
              0.478
Nmar_1125
KEGG- sso-SSO5336 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family (55 aa)
              0.431
tfe
Transcription factor E; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems [...] (171 aa)
   
          0.418
Nmar_0443
PFAM- 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG- mse-Msed_1437 4Fe-4S ferredoxin, iron-sulfur binding domain protein (315 aa)
 
          0.403
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
Server load: low (11%) [HD]