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pdaD protein (Nitrosopumilus maritimus) - STRING interaction network
"pdaD" - KEGG: aba:Acid345_1944 arginine decarboxylase in Nitrosopumilus maritimus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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[Homology]
Score
pdaDKEGG- aba-Acid345_1944 arginine decarboxylase; TIGRFAM- arginine decarboxylase, pyruvoyl-dependent; PFAM- Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family (183 aa)    
Predicted Functional Partners:
Nmar_0925
TIGRFAM- putative agmatinase; PFAM- Arginase/agmatinase/formiminoglutamase; KEGG- tac-Ta1058 agmatinase; Belongs to the arginase family (291 aa)
       
  0.972
argH
KEGG- mtp-Mthe_0492 argininosuccinate lyase; TIGRFAM- argininosuccinate lyase; PFAM- fumarate lyase (485 aa)
         
    0.800
Nmar_1603
PFAM- PUA domain containing protein; KEGG- rci-RCIX415 putative archaeosine tRNA-ribosyltransferase (157 aa)
   
     
  0.641
Nmar_1418
TIGRFAM- orotidine 5’-phosphate decarboxylase; PFAM- Orotidine 5’-phosphate decarboxylase; KEGG- mma-MM_2083 orotidine 5’-phosphate decarboxylase (246 aa)
   
     
  0.641
Nmar_1751
Tyrosine--tRNA ligase; TIGRFAM- tyrosyl-tRNA synthetase; PFAM- aminoacyl-tRNA synthetase class Ib; KEGG- tko-TK0568 tyrosyl-tRNA synthetase (348 aa)
         
  0.625
Nmar_1394
PFAM- N2N2-dimethylguanosine tRNA methyltransferase; KEGG- msi-Msm_1031 N2,N2-dimethylguanosine tRNA methyltransferase, Trm1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family (382 aa)
           
  0.621
tgtA
tRNA-guanine(15) transglycosylase; Exchanges the guanine residue with 7-cyano-7- deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D- loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family (507 aa)
           
  0.568
leuS
Leucine--tRNA ligase; TIGRFAM- leucyl-tRNA synthetase; KEGG- mba-Mbar_A2048 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family (955 aa)
 
          0.520
speE
Polyamine aminopropyltransferase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine (558 aa)
              0.469
Nmar_0648
PFAM- deoxyhypusine synthase; KEGG- tvo-TVN0418 deoxyhypusine synthase (313 aa)
 
          0.453
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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