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Nmar_1348 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_1348" - Translation initiation factor 1A in Nitrosopumilus maritimus
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Nmar_1348Translation initiation factor 1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits (104 aa)    
Predicted Functional Partners:
rps13
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement (194 aa)
   
 
  0.883
rps17
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (107 aa)
 
 
  0.869
rps7
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center (199 aa)
 
 
  0.851
rps11
30S ribosomal protein S11; Located on the platform of the 30S subunit (108 aa)
   
 
  0.812
Nmar_0399
TIGRFAM- ribosomal protein S5; PFAM- ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG- tpe-Tpen_0236 ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family (238 aa)
 
 
  0.796
Nmar_0425
PFAM- ribosomal protein S9; KEGG- mth-MTH39 30S ribosomal protein S9/L13; Belongs to the universal ribosomal protein uS9 family (149 aa)
   
 
  0.795
infB
Probable translation initiation factor IF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2 (593 aa)
   
 
  0.787
rps2
PFAM- ribosomal protein S2; KEGG- tpe-Tpen_0274 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family (207 aa)
 
 
  0.783
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit (150 aa)
   
      0.776
rps4
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (201 aa)
 
 
  0.771
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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