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rlmN protein (Nitrosopumilus maritimus) - STRING interaction network
"rlmN" - Ribosomal RNA large subunit methyltransferase N in Nitrosopumilus maritimus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rlmNRibosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA (351 aa)    
Predicted Functional Partners:
Nmar_1381
PFAM- ribosomal RNA adenine methylase transferase; KEGG- tpt-Tpet_1357 dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family (234 aa)
   
   
  0.720
rpl21e
PFAM- Ribosomal protein L21e; KEGG- hbu-Hbut_1660 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family (99 aa)
   
        0.685
Nmar_1383
PFAM- RNA polymerase Rpb4; KEGG- tpe-Tpen_0352 RNA polymerase Rpb4 (108 aa)
              0.665
radA
DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules (388 aa)
   
        0.632
Nmar_1382
PFAM- Protein of unknown function DUF655; KEGG- tac-Ta1299 putative nucleotide binding protein (188 aa)
              0.625
Nmar_1380
TIGRFAM- putative methylase; PFAM- methyltransferase small; KEGG- msi-Msm_1373 methyltransferase, HemK (178 aa)
              0.625
Nmar_1261
MiaB-like tRNA modifying enzyme; KEGG- pab-PAB1134 hypothetical protein; TIGRFAM- RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM- deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART- Elongator protein 3/MiaB/NifB (422 aa)
   
 
  0.586
Nmar_1389
PFAM- oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG- rci-LRC391 predicted dihydroorotate dehydrogenase, electron transfer subunit (270 aa)
 
          0.485
Nmar_1387
annotation not available (60 aa)
              0.461
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate (303 aa)
 
        0.445
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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