node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Nmar_0089 | Nmar_1245 | Nmar_0089 | Nmar_1245 | PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mmp:MMP1032 replication protein A. | PFAM: SMC domain protein; KEGG: sto:ST2108 hypothetical purine NTPase. | 0.541 |
Nmar_0089 | Nmar_1632 | Nmar_0089 | Nmar_1632 | PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mmp:MMP1032 replication protein A. | PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: tvo:TVN0019 DNA topoisomerase I. | 0.583 |
Nmar_0089 | fen | Nmar_0089 | Nmar_0703 | PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mmp:MMP1032 replication protein A. | XPG I domain protein; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. [...] | 0.575 |
Nmar_0089 | pcn | Nmar_0089 | Nmar_1755 | PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mmp:MMP1032 replication protein A. | Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family. | 0.823 |
Nmar_0089 | radA | Nmar_0089 | Nmar_1386 | PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mmp:MMP1032 replication protein A. | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.605 |
Nmar_0295 | radA | Nmar_0295 | Nmar_1386 | ABC transporter related; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ABC transporter related; metal-binding domain in RNase L inhibitor, RLI; SMART: AAA ATPase; KEGG: pab:PAB0824 RNase l inhibitor. | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.701 |
Nmar_1245 | Nmar_0089 | Nmar_1245 | Nmar_0089 | PFAM: SMC domain protein; KEGG: sto:ST2108 hypothetical purine NTPase. | PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mmp:MMP1032 replication protein A. | 0.541 |
Nmar_1245 | Nmar_1632 | Nmar_1245 | Nmar_1632 | PFAM: SMC domain protein; KEGG: sto:ST2108 hypothetical purine NTPase. | PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: tvo:TVN0019 DNA topoisomerase I. | 0.865 |
Nmar_1245 | dbh | Nmar_1245 | Nmar_0642 | PFAM: SMC domain protein; KEGG: sto:ST2108 hypothetical purine NTPase. | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis. | 0.469 |
Nmar_1245 | fen | Nmar_1245 | Nmar_0703 | PFAM: SMC domain protein; KEGG: sto:ST2108 hypothetical purine NTPase. | XPG I domain protein; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. [...] | 0.718 |
Nmar_1245 | pcn | Nmar_1245 | Nmar_1755 | PFAM: SMC domain protein; KEGG: sto:ST2108 hypothetical purine NTPase. | Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family. | 0.426 |
Nmar_1245 | radA | Nmar_1245 | Nmar_1386 | PFAM: SMC domain protein; KEGG: sto:ST2108 hypothetical purine NTPase. | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.902 |
Nmar_1632 | Nmar_0089 | Nmar_1632 | Nmar_0089 | PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: tvo:TVN0019 DNA topoisomerase I. | PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mmp:MMP1032 replication protein A. | 0.583 |
Nmar_1632 | Nmar_1245 | Nmar_1632 | Nmar_1245 | PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: tvo:TVN0019 DNA topoisomerase I. | PFAM: SMC domain protein; KEGG: sto:ST2108 hypothetical purine NTPase. | 0.865 |
Nmar_1632 | dbh | Nmar_1632 | Nmar_0642 | PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: tvo:TVN0019 DNA topoisomerase I. | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis. | 0.508 |
Nmar_1632 | fen | Nmar_1632 | Nmar_0703 | PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: tvo:TVN0019 DNA topoisomerase I. | XPG I domain protein; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. [...] | 0.722 |
Nmar_1632 | pcn | Nmar_1632 | Nmar_1755 | PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: tvo:TVN0019 DNA topoisomerase I. | Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family. | 0.670 |
Nmar_1632 | radA | Nmar_1632 | Nmar_1386 | PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: tvo:TVN0019 DNA topoisomerase I. | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.606 |
Nmar_1632 | rnhB | Nmar_1632 | Nmar_1393 | PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: tvo:TVN0019 DNA topoisomerase I. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.404 |
dbh | Nmar_1245 | Nmar_0642 | Nmar_1245 | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis. | PFAM: SMC domain protein; KEGG: sto:ST2108 hypothetical purine NTPase. | 0.469 |