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Nmar_1428 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_1428" - PFAM: THUMP domain protein in Nitrosopumilus maritimus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_1428PFAM- THUMP domain protein; KEGG- tpe-Tpen_0214 THUMP domain protein (173 aa)    
Predicted Functional Partners:
Nmar_1427
TIGRFAM- Sua5/YciO/YrdC/YwlC family protein; PFAM- SUA5/yciO/yrdC domain; KEGG- afu-AF0781 hypothetical protein (198 aa)
              0.917
Nmar_0034
KEGG- pfu-PF1029 hypothetical protein (335 aa)
   
          0.591
Nmar_1198
PFAM- tRNA pseudouridine synthase D TruD; KEGG- pis-Pisl_0511 pseudouridylate synthase (398 aa)
   
      0.581
Nmar_0536
PFAM- protein of unknown function DUF309; KEGG- pcl-Pcal_1144 protein of unknown function DUF309 (186 aa)
   
          0.580
rrp41
Exosome complex component Rrp41; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3’->5’ exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails (244 aa)
   
        0.570
truB
Probable tRNA pseudouridine synthase B; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs (332 aa)
   
      0.548
Nmar_0093
PFAM- protein of unknown function DUF354; KEGG- tdn-Tmden_0185 protein of unknown function DUF354 (350 aa)
   
          0.547
nep1
Ribosomal RNA small subunit methyltransferase Nep1; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA (222 aa)
   
   
  0.542
Nmar_0618
KEGG- iho-Igni_1201 solute binding protein-like protein (820 aa)
   
          0.541
Nmar_0994
PFAM- alpha/beta hydrolase fold; KEGG- mva-Mvan_2912 alpha/beta hydrolase fold (281 aa)
              0.535
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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