Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
KEGG- msi-Msm_0833 ribosomal protein S17a; Belongs to the eukaryotic ribosomal protein eS17 family (129 aa)
Predicted Functional Partners:
PFAM- Ribosomal protein L31e; KEGG- aor-AO090011000451 predicted protein Pfam- Collagen PROSITE- GLN_RICH GLU_RICH GLY_RICH LYS_RICH; Belongs to the ribosomal protein L31e family (187 aa)
PFAM- Ribosomal protein L21e; KEGG- hbu-Hbut_1660 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family (99 aa)
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (160 aa)
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (131 aa)
PFAM- Ribosomal protein L32e; KEGG- pai-PAE2099 ribosomal protein L32 (134 aa)
annotation not available (147 aa)
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit (150 aa)
PFAM- Ribosomal protein S27E; KEGG- pis-Pisl_0434 ribosomal protein S27E (65 aa)
50S ribosomal protein L44e; Binds to the 23S rRNA (93 aa)
PFAM- Ribosomal protein L15e; KEGG- smr-Smar_0852 ribosomal protein L15e (154 aa)
Your Current Organism:
NCBI taxonomy Id: 436308 Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1