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Nmar_1564 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_1564" - PFAM: TPR repeat-containing protein in Nitrosopumilus maritimus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_1564PFAM- TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART- Tetratricopeptide domain protein; KEGG- mmz-MmarC7_0114 TPR repeat-containing protein (199 aa)    
Predicted Functional Partners:
Nmar_1565
PFAM- Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG- afw-Anae109_2774 alcohol dehydrogenase zinc-binding domain protein (361 aa)
              0.845
Nmar_0740
PFAM- TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART- Tetratricopeptide domain protein; KEGG- mth-MTH83 O-linked GlcNAc transferase (158 aa)
 
       
0.625
Nmar_0351
PFAM- TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART- Tetratricopeptide domain protein; KEGG- mmz-MmarC7_1279 periplasmic copper-binding (553 aa)
   
          0.609
Nmar_1567
PFAM- prephenate dehydratase; amino acid-binding ACT domain protein; KEGG- det-DET0461 chorismate mutase / prephenate dehydratase (271 aa)
              0.607
csl4
Exosome complex component Csl4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (183 aa)
              0.607
Nmar_0739
PFAM- TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART- Tetratricopeptide domain protein; KEGG- mth-MTH83 O-linked GlcNAc transferase (75 aa)
   
          0.586
Nmar_0681
PFAM- TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART- Tetratricopeptide domain protein; KEGG- mba-Mbar_A2604 TPR repeat (375 aa)
 
          0.579
Nmar_0069
PFAM- TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART- Tetratricopeptide domain protein; KEGG- mmp-MMP0673 TPR repeat (320 aa)
   
          0.527
Nmar_1019
PFAM- TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART- Tetratricopeptide domain protein; KEGG- mth-MTH83 O-linked GlcNAc transferase (273 aa)
 
       
0.512
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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