STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hflXGTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family (371 aa)    
Predicted Functional Partners:
tfe
Transcription factor E; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems [...]
     
 0.983
Nmar_1606
tRNA (cytidine(56)-2'-O)-methyltransferase; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family
       0.922
Nmar_1603
PFAM: PUA domain containing protein; KEGG: rci:RCIX415 putative archaeosine tRNA-ribosyltransferase
       0.748
Nmar_1604
Phosphate uptake regulator, PhoU; PFAM: SpoVT/AbrB domain protein; PhoU family protein; KEGG: mba:Mbar_A1765 hypothetical protein
 
     0.725
Nmar_0764
PFAM: CBS domain containing protein; cation transporter; KEGG: smu:SMU.1709 putative potassium uptake protein TrkH
     
 0.580
Nmar_0546
Aminotransferase; PFAM: Chorismate mutase; aminotransferase class I and II; KEGG: tpt:Tpet_1516 aminotransferase, class I and II
  
    0.574
Nmar_1473
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: sun:SUN_2438 cytosine-specific methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
  
    0.551
Nmar_0825
PFAM: band 7 protein; KEGG: rrs:RoseRS_2924 band 7 protein
  
  
 0.514
nac
Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome
       0.511
Nmar_0425
PFAM: ribosomal protein S9; KEGG: mth:MTH39 30S ribosomal protein S9/L13; Belongs to the universal ribosomal protein uS9 family
   
 
 0.504
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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