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nep1 protein (Nitrosopumilus maritimus) - STRING interaction network
"nep1" - Ribosomal RNA small subunit methyltransferase Nep1 in Nitrosopumilus maritimus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
nep1Ribosomal RNA small subunit methyltransferase Nep1; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA (222 aa)    
Predicted Functional Partners:
Nmar_1409
PFAM- KH type 1 domain protein; SMART- KH domain protein; KEGG- mka-MK0513 predicted RNA-binding protein containing KH domain) (190 aa)
   
 
  0.950
Nmar_1391
PFAM- Pre-mRNA processing ribonucleoprotein, binding domain protein; NOSIC domain protein; KEGG- smr-Smar_1256 pre-mRNA processing ribonucleoprotein, binding region (470 aa)
   
 
  0.921
rtcA
RNA 3’-terminal phosphate cyclase; Catalyzes the conversion of 3’-phosphate to a 2’,3’- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps- (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3’P to produce RNA- N3’PP5’A; (C) and attack of the adjacent 2’-hydroxyl on the 3’- phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (338 aa)
   
 
  0.919
Nmar_0073
KEGG- mja-MJ1320 hypothetical protein (122 aa)
     
 
  0.887
Nmar_1757
annotation not available (92 aa)
   
        0.885
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit (150 aa)
 
   
  0.855
Nmar_1626
annotation not available (374 aa)
              0.845
rps8e
KEGG- tpe-Tpen_0358 ribosomal protein S8e (127 aa)
     
 
  0.836
rps28e
PFAM- Ribosomal protein S28e; KEGG- smr-Smar_0826 ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family (70 aa)
     
 
  0.828
rpl7ae
50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C’/D’ sRNAs (128 aa)
     
 
  0.819
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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