STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psmB2Proteasome endopeptidase complex; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. (210 aa)    
Predicted Functional Partners:
Nmar_1727
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sso:SSO0761 mRNA 3'-end processing factor, putative.
     
 0.976
psmB1
Proteasome endopeptidase complex; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
  
  
 
0.909
Nmar_1314
Proteasome endopeptidase complex; PFAM: 20S proteasome A and B subunits; KEGG: afu:AF0490 proteasome, subunit alpha.
 
 
0.780
Nmar_0811
Proteasome endopeptidase complex; PFAM: 20S proteasome A and B subunits; KEGG: afu:AF0490 proteasome, subunit alpha.
 
 
0.776
egsA
3-dehydroquinate synthase; Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1- phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea.
 
     0.742
Nmar_1577
TIGRFAM: thermosome; PFAM: chaperonin Cpn60/TCP-1; KEGG: pfu:PF1974 thermosome, single subunit.
  
 
 0.649
Nmar_1792
TIGRFAM: thermosome; PFAM: chaperonin Cpn60/TCP-1; KEGG: mbn:Mboo_0199 thermosome.
  
 
 0.642
rpl4
Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.
  
 
 
 0.608
eif5a
Translation initiation factor eIF-5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
  
   0.580
Nmar_1125
KEGG: sso:SSO5336 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
   
  0.539
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.