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rtcA protein (Nitrosopumilus maritimus) - STRING interaction network
"rtcA" - RNA 3'-terminal phosphate cyclase in Nitrosopumilus maritimus
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rtcARNA 3’-terminal phosphate cyclase; Catalyzes the conversion of 3’-phosphate to a 2’,3’- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps- (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3’P to produce RNA- N3’PP5’A; (C) and attack of the adjacent 2’-hydroxyl on the 3’- phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (338 aa)    
Predicted Functional Partners:
nep1
Ribosomal RNA small subunit methyltransferase Nep1; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA (222 aa)
   
 
  0.919
Nmar_1409
PFAM- KH type 1 domain protein; SMART- KH domain protein; KEGG- mka-MK0513 predicted RNA-binding protein containing KH domain) (190 aa)
     
 
  0.906
Nmar_0073
KEGG- mja-MJ1320 hypothetical protein (122 aa)
     
 
  0.874
rtcB
tRNA-splicing ligase RtcB; PFAM- protein of unknown function UPF0027; KEGG- tko-TK0358 hypothetical protein; Belongs to the RtcB family (482 aa)
 
   
  0.856
Nmar_1391
PFAM- Pre-mRNA processing ribonucleoprotein, binding domain protein; NOSIC domain protein; KEGG- smr-Smar_1256 pre-mRNA processing ribonucleoprotein, binding region (470 aa)
 
 
  0.818
Nmar_0232
PFAM- protein of unknown function DUF101; KEGG- mja-MJ0024 hypothetical protein (138 aa)
 
 
 
  0.794
Nmar_0439
KEGG- mbn-Mboo_2393 nucleotide binding protein, PINc (159 aa)
   
   
  0.789
pyrB
KEGG- pho-PH0720 aspartate carbamoyltransferase catalytic chain; TIGRFAM- aspartate carbamoyltransferase; PFAM- aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain (309 aa)
           
  0.788
Nmar_1381
PFAM- ribosomal RNA adenine methylase transferase; KEGG- tpt-Tpet_1357 dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family (234 aa)
     
   
  0.759
rps8e
KEGG- tpe-Tpen_0358 ribosomal protein S8e (127 aa)
     
 
  0.737
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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