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rnz protein (Nitrosopumilus maritimus) - STRING interaction network
"rnz" - Ribonuclease Z in Nitrosopumilus maritimus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
rnzRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA; Belongs to the RNase Z family (299 aa)    
Predicted Functional Partners:
Nmar_1775
PFAM- putative RNA methylase; DNA methylase N-4/N-6 domain protein; KEGG- mmp-MMP0149 putative methyltransferase (315 aa)
   
   
  0.926
Nmar_1774
KEGG- smr-Smar_1238 ribose-phosphate pyrophosphokinase; TIGRFAM- ribose-phosphate pyrophosphokinase; PFAM- phosphoribosyltransferase; Belongs to the ribose-phosphate pyrophosphokinase family (292 aa)
   
        0.924
cobB
NAD-dependent protein deacylase; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form. Deacetylates the N-terminal lysine residue of Alba, the major archaeal chromatin protein and that, in turn, increases Alba’s DNA binding affinity, thereby repressing transcription (242 aa)
   
        0.848
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate; Belongs to the TrpA family (268 aa)
         
  0.730
Nmar_1773
PFAM- MscS Mechanosensitive ion channel; KEGG- sco-SCO7001 integral membrane protein (547 aa)
   
        0.730
Nmar_0236
KEGG- pfu-PF0264 histidyl-tRNA synthetase; TIGRFAM- histidyl-tRNA synthetase; PFAM- tRNA synthetase class II (G H P and S); Anticodon-binding domain protein (427 aa)
     
 
  0.724
Nmar_1751
Tyrosine--tRNA ligase; TIGRFAM- tyrosyl-tRNA synthetase; PFAM- aminoacyl-tRNA synthetase class Ib; KEGG- tko-TK0568 tyrosyl-tRNA synthetase (348 aa)
     
   
  0.639
Nmar_1381
PFAM- ribosomal RNA adenine methylase transferase; KEGG- tpt-Tpet_1357 dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family (234 aa)
   
        0.611
Nmar_1039
TIGRFAM- tRNA intron endonuclease; PFAM- tRNA intron endonuclease, catalytic domain protein; KEGG- hbu-Hbut_0045 general archaeal splicing enzyme (178 aa)
     
   
  0.590
Nmar_0450
TIGRFAM- tRNA intron endonuclease; PFAM- tRNA intron endonuclease, catalytic domain protein; KEGG- mmp-MMP1132 tRNA splicing endonuclease (199 aa)
     
   
  0.590
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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