STRINGSTRING
Nmar_1779 protein (Nitrosopumilus maritimus) - STRING interaction network
"Nmar_1779" - UPF0201 protein Nmar_1779 in Nitrosopumilus maritimus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nmar_1779UPF0201 protein Nmar_1779; PFAM- Protein of unknown function DUF54; KEGG- mth-MTH433 hypothetical protein; Belongs to the UPF0201 family (134 aa)    
Predicted Functional Partners:
Nmar_1780
KEGG- hbu-Hbut_0338 dephospho-CoA kinase, CoaE (197 aa)
 
          0.949
Nmar_1783
KEGG- tpe-Tpen_0367 putative serine/threonine protein kinase (253 aa)
 
          0.892
cca
CCA-adding enzyme; Catalyzes the addition and repair of the essential 3’- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate (443 aa)
 
          0.882
Nmar_1781
RNA 2’,3’-cyclic phosphodiesterase; Hydrolyzes RNA 2’,3’-cyclic phosphodiester to an RNA 2’- phosphomonoester (180 aa)
              0.815
Nmar_1719
PFAM- Protein of unknown function DUF137; KEGG- smr-Smar_1379 protein of unknown function DUF137 (254 aa)
 
     
  0.673
Nmar_1778
Uncharacterized protein; KEGG- ppe-PEPE_0059 subtilisin-like serine protease (246 aa)
              0.622
Nmar_1197
PFAM- regulatory protein AsnC/Lrp family; KEGG- hbu-Hbut_0009 transcriptional regulator of AsnC family - conserved archaeal protein (76 aa)
   
          0.595
rps27e
PFAM- Ribosomal protein S27E; KEGG- pis-Pisl_0434 ribosomal protein S27E (65 aa)
   
          0.580
albA
DNA/RNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family (95 aa)
   
     
  0.579
rrp4
Exosome complex component Rrp4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome (226 aa)
   
          0.572
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
Server load: low (12%) [HD]