STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO062_25785Unannotated protein. (256 aa)    
Predicted Functional Partners:
AO062_06825
Unannotated protein.
  
  
 
0.921
AO062_12015
Unannotated protein.
  
  
 
0.919
AO062_06830
Unannotated protein.
  
  
 
0.915
AO062_06820
Unannotated protein.
 
 
 0.913
AO062_25790
Unannotated protein.
 
    
0.828
AO062_25795
Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.781
AO062_25810
Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.756
AO062_25800
Unannotated protein.
  
    0.753
AO062_25805
Unannotated protein.
       0.752
AO062_25815
Unannotated protein.
 
 
 0.704
Your Current Organism:
Variovorax boronicumulans
NCBI taxonomy Id: 436515
Other names: KCTC 22010, NBRC 103145, V. boronicumulans, Variovorax boronicumulans Miwa et al. 2008, strain BAM-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.