STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733935_03749Unannotated protein. (189 aa)    
Predicted Functional Partners:
GCA_000733935_03747
Unannotated protein.
       0.788
GCA_000733935_03746
Unannotated protein.
       0.780
GCA_000733935_03748
Unannotated protein.
       0.773
GCA_000733935_03750
Unannotated protein.
       0.636
GCA_000733935_03751
Unannotated protein.
       0.548
GCA_000733935_03752
Unannotated protein.
       0.548
GCA_000733935_03745
Unannotated protein.
       0.421
Your Current Organism:
Methylomarinum vadi
NCBI taxonomy Id: 438855
Other names: DSM 18976, JCM 13665, M. vadi, Methylococcaceae bacterium IT-4, Methylococcaceae bacterium T2-1, Methylomarinum vadi Hirayama et al. 2013, strain IT-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.