STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733935_04014Unannotated protein. (361 aa)    
Predicted Functional Partners:
GCA_000733935_04013
Unannotated protein.
 0.996
GCA_000733935_04016
Unannotated protein.
 
 
  0.971
GCA_000733935_03073
Unannotated protein.
   
  0.947
GCA_000733935_03075
Unannotated protein.
   
  0.947
GCA_000733935_03078
Unannotated protein.
   
  0.947
GCA_000733935_03082
Unannotated protein.
   
  0.946
GCA_000733935_03083
Unannotated protein.
   
  0.945
GCA_000733935_03086
Unannotated protein.
   
  0.944
GCA_000733935_03063
Unannotated protein.
   
 0.943
GCA_000733935_03070
Unannotated protein.
   
  0.941
Your Current Organism:
Methylomarinum vadi
NCBI taxonomy Id: 438855
Other names: DSM 18976, JCM 13665, M. vadi, Methylococcaceae bacterium IT-4, Methylococcaceae bacterium T2-1, Methylomarinum vadi Hirayama et al. 2013, strain IT-4
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