STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0033PFAM: YcfA family protein; KEGG: npu:Npun_R4600 YcfA family protein; IMG reference gene:2503005728; PFAM: YcfA-like protein. (62 aa)    
Predicted Functional Partners:
Dalk_0032
PFAM: protein of unknown function UPF0150; KEGG: npu:Npun_R4601 hypothetical protein; IMG reference gene:2503005727; PFAM: Uncharacterised protein family (UPF0150).
   
 0.996
Dalk_2443
KEGG: sus:Acid_4367 hypothetical protein; IMG reference gene:2503008164.
  
 
 0.770
Dalk_4291
KEGG: amr:AM1_2100 hypothetical protein; IMG reference gene:2503010039; PFAM: Uncharacterized protein conserved in bacteria (DUF2136).
     
 0.764
Dalk_4292
Putative transcription regulator with HTH domain; KEGG: pmr:PMI3496 hypothetical protein; IMG reference gene:2503010040; PFAM: Domain of unknown function (DUF955).
     
 0.763
Dalk_0517
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: rms:RMA_1362 DNA-damage-inducible protein J; IMG reference gene:2503006217; PFAM: RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family.
    
 0.731
Dalk_2444
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: csc:Csac_0303 AbrB family transcriptional regulator; IMG reference gene:2503008165; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family.
     
 0.730
Dalk_1774
TIGRFAM: addiction module toxin, Txe/YoeB family; addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; Addiction module toxin Txe/YoeB; KEGG: dol:Dole_2607 addiction module antitoxin; IMG reference gene:2503007485; PFAM: Plasmid stabilisation system protein; TIGRFAM: addiction module toxin, RelE/StbE family; toxin-antitoxin system, toxin component, Txe/YoeB family.
     
 0.722
Dalk_2399
TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: rrs:RoseRS_2038 addiction module antitoxin; IMG reference gene:2503008119; PFAM: Plasmid encoded toxin Txe; TIGRFAM: toxin-antitoxin system, toxin component, Txe/YoeB family.
     
 0.722
Dalk_2647
KEGG: dol:Dole_0754 hypothetical protein; IMG reference gene:2503008369; PFAM: Helix-turn-helix.
    
 0.712
Dalk_4890
KEGG: dol:Dole_0754 hypothetical protein; IMG reference gene:2503010648.
    
 0.712
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.