STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0085PFAM: Pyrrolo-quinoline quinone; KEGG: mac:MA1904 hypothetical protein; IMG reference gene:2503005780. (551 aa)    
Predicted Functional Partners:
Dalk_4012
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: dol:Dole_1570 competence/damage-inducible protein CinA; IMG reference gene:2503009757; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain.
  
 
 0.767
Dalk_0518
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2503006218; PFAM: Pyridine nucleotide-disulphide oxidoreductase; GXGXG motif.
    
  0.761
Dalk_0117
GMP synthase, large subunit; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; IMG reference gene:2503005812; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit.
    
  0.746
Dalk_0086
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_2407 radical SAM domain-containing protein; IMG reference gene:2503005781; PFAM: Radical SAM superfamily; B12 binding domain.
       0.723
Dalk_0519
Ferredoxin-dependent glutamate synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: dol:Dole_2275 ferredoxin-dependent glutamate synthase; IMG reference gene:2503006219; PFAM: 4Fe-4S binding domain; Conserved region in glutamate synthase.
   
  0.674
Dalk_0087
PFAM: Radical SAM domain protein; KEGG: rpd:RPD_4322 radical SAM family protein; IMG reference gene:2503005782; PFAM: Radical SAM superfamily.
  
    0.667
Dalk_0672
KEGG: dvl:Dvul_2072 hypothetical protein; IMG reference gene:2503006373; PFAM: MgtE intracellular N domain.
    
 
 0.667
Dalk_5066
Putative heterodisulfide reductase, hybrid of subunits C and E; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mba:Mbar_A1599 CoB-CoM heterodisulfide reductase, subunit D; IMG reference gene:2503010825; PFAM: Nitrate reductase gamma subunit.
   
 
 0.626
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
   
   0.618
Dalk_2523
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0824 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2503008244; PFAM: Pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S binding domain; TIGRFAM: putative selenate reductase, YgfK subunit.
    
  0.552
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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