STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0351KEGG: dol:Dole_1433 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; IMG reference gene:2503006048; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase. (368 aa)    
Predicted Functional Partners:
Dalk_0350
PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dol:Dole_1433 tetraacyldisaccharide 4'-kinase; IMG reference gene:2503006047; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase).
 
 0.998
Dalk_1794
KEGG: dol:Dole_2837 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; IMG reference gene:2503007505; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase.
  
 0.994
Dalk_3702
PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dol:Dole_1762 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; IMG reference gene:2503009446; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase).
 
 0.994
Dalk_0360
PFAM: lipid A biosynthesis acyltransferase; KEGG: sfu:Sfum_0376 lipid A biosynthesis acyltransferase; IMG reference gene:2503006057; PFAM: Bacterial lipid A biosynthesis acyltransferase.
 
 
 0.949
Dalk_3447
KEGG: sfu:Sfum_0006 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); IMG reference gene:2503009179; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein.
 
   
 0.934
Dalk_0115
KEGG: dol:Dole_0968 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; IMG reference gene:2503005810; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase.
 
  
 0.932
Dalk_1796
KEGG: dol:Dole_2836 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; IMG reference gene:2503007507; PFAM: ABC transporter transmembrane region; ABC transporter; TIGRFAM: lipid A export permease/ATP-binding protein MsbA.
  
 0.897
Dalk_0348
PFAM: permease YjgP/YjgQ family protein; KEGG: dol:Dole_1431 permease YjgP/YjgQ family protein; IMG reference gene:2503006045; PFAM: Predicted permease YjgP/YjgQ family.
 
   
 0.872
Dalk_0349
PFAM: permease YjgP/YjgQ family protein; KEGG: dol:Dole_1432 permease YjgP/YjgQ family protein; IMG reference gene:2503006046; PFAM: Predicted permease YjgP/YjgQ family.
 
   
 0.865
Dalk_1795
PFAM: protein of unknown function DUF374; KEGG: afe:Lferr_0647 protein of unknown function DUF374; IMG reference gene:2503007506; PFAM: Domain of unknown function (DUF374).
 
  
  0.857
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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