STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0552KEGG: sfu:Sfum_0147 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; IMG reference gene:2503006253; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase. (172 aa)    
Predicted Functional Partners:
Dalk_0553
TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: dol:Dole_2232 methionyl-tRNA formyltransferase; IMG reference gene:2503006254; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase.
 0.993
Dalk_4114
PFAM: ribosomal protein L21; KEGG: dol:Dole_0086 ribosomal protein L21; IMG reference gene:2503009860; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21.
 
 
 0.970
Dalk_1457
TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: dol:Dole_2692 trigger factor; IMG reference gene:2503007164; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor.
 
 
 0.961
Dalk_1800
TIGRFAM: ribosomal protein L20; KEGG: dol:Dole_3041 ribosomal protein L20; IMG reference gene:2503007511; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20.
 
 
 0.961
Dalk_0916
PFAM: ribosomal protein L9; KEGG: dol:Dole_0007 ribosomal protein L9; IMG reference gene:2503006617; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9.
 
   0.952
Dalk_1195
PFAM: ribosomal protein S20; KEGG: sfu:Sfum_2087 ribosomal protein S20; IMG reference gene:2503006897; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20.
  
 
 0.951
Dalk_4649
PFAM: ribosomal protein S16; KEGG: lme:LEUM_1485 SSU ribosomal protein S16P; IMG reference gene:2503010405; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16.
 
   0.950
Dalk_4644
PFAM: ribosomal protein L19; KEGG: sat:SYN_00770 50S ribosomal protein L19; IMG reference gene:2503010400; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type.
 
   0.948
Dalk_1910
TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: dol:Dole_0713 ribosomal protein L22; IMG reference gene:2503007622; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type.
  
 
 
 0.947
Dalk_1904
TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: dol:Dole_0719 ribosomal protein L24; IMG reference gene:2503007616; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle.
  
   0.944
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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