STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0763KEGG: dol:Dole_0682 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; IMG reference gene:2503006464; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase. (328 aa)    
Predicted Functional Partners:
Dalk_3728
TIGRFAM: dethiobiotin synthase; KEGG: dol:Dole_0681 dethiobiotin synthase; IMG reference gene:2503009472; TIGRFAM: dethiobiotin synthase.
 
 
 0.995
Dalk_4030
PFAM: aminotransferase class-III; KEGG: bpl:BURPS1106A_A0436 hypothetical protein; IMG reference gene:2503009775; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase.
  
 0.990
Dalk_0407
TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: dol:Dole_2493 acetylornithine and succinylornithine aminotransferase; IMG reference gene:2503006104; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases.
 
 
 
 0.948
Dalk_0376
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; KEGG: dol:Dole_0391 biotin--acetyl-CoA-carboxylase ligase; IMG reference gene:2503006073; PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: BirA biotin operon repressor domain; birA, biotin-[acetyl-CoA-carboxylase] ligase region.
  
 
 0.918
Dalk_0098
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA2730 hypothetical protein; IMG reference gene:2503005793; PFAM: Methyltransferase domain.
  
 
 0.664
Dalk_0291
PFAM: Methyltransferase type 11; KEGG: mrd:Mrad2831_0981 methyltransferase type 11; IMG reference gene:2503005988; PFAM: Methyltransferase domain.
  
 
 0.664
Dalk_0749
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cpf:CPF_0881 hypothetical protein; IMG reference gene:2503006450; PFAM: Methyltransferase domain.
  
 
 0.664
Dalk_0949
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dol:Dole_2579 methyltransferase type 11; IMG reference gene:2503006650; PFAM: ubiE/COQ5 methyltransferase family.
  
 
 0.664
Dalk_1496
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dol:Dole_1525 methyltransferase type 11; IMG reference gene:2503007206; PFAM: Methyltransferase domain.
  
 
 0.664
Dalk_2452
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dol:Dole_2593 methyltransferase type 11; IMG reference gene:2503008173; PFAM: Methyltransferase domain.
  
 
 0.664
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.