STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0916PFAM: ribosomal protein L9; KEGG: dol:Dole_0007 ribosomal protein L9; IMG reference gene:2503006617; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9. (148 aa)    
Predicted Functional Partners:
Dalk_0918
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; IMG reference gene:2503006619; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18.
 
 
 0.999
Dalk_0919
PFAM: ribosomal protein S6; KEGG: dol:Dole_0010 ribosomal protein S6; IMG reference gene:2503006620; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6.
 
 
 0.999
Dalk_1896
PFAM: ribosomal protein L15; KEGG: dol:Dole_0727 ribosomal protein L15; IMG reference gene:2503007608; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle.
  
 0.999
Dalk_1914
PFAM: ribosomal protein L4/L1e; KEGG: dol:Dole_0709 ribosomal protein L4/L1e; IMG reference gene:2503007626; PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle.
  
 0.999
Dalk_1922
TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: dol:Dole_0701 ribosomal protein L7/L12; IMG reference gene:2503007634; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12.
  
 0.999
Dalk_1800
TIGRFAM: ribosomal protein L20; KEGG: dol:Dole_3041 ribosomal protein L20; IMG reference gene:2503007511; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20.
 
 
 0.997
Dalk_1925
PFAM: ribosomal protein L11; KEGG: dde:Dde_2992 50S ribosomal protein L11; IMG reference gene:2503007637; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11.
 
 
 0.997
Dalk_4114
PFAM: ribosomal protein L21; KEGG: dol:Dole_0086 ribosomal protein L21; IMG reference gene:2503009860; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21.
 
 
 0.997
Dalk_1888
PFAM: ribosomal protein L17; KEGG: dol:Dole_0734 ribosomal protein L17; IMG reference gene:2503007600; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17.
  
 
 0.996
Dalk_1890
PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: gsu:GSU2832 30S ribosomal protein S4; IMG reference gene:2503007602; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type.
  
 
 0.996
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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