STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_13662-dehydro-3-deoxyphosphooctonate aldolase; Catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; IMG reference gene:2503007071; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase. (273 aa)    
Predicted Functional Partners:
Dalk_1365
TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dol:Dole_0510 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; IMG reference gene:2503007070; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA.
  
 0.995
Dalk_3447
KEGG: sfu:Sfum_0006 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); IMG reference gene:2503009179; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein.
 
 
 0.989
Dalk_0115
KEGG: dol:Dole_0968 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; IMG reference gene:2503005810; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase.
 
  
 0.931
Dalk_0351
KEGG: dol:Dole_1433 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; IMG reference gene:2503006048; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase.
 
   
 0.839
Dalk_1362
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dol:Dole_0507 ABC transporter-related protein; IMG reference gene:2503007067; PFAM: ABC transporter.
 
   
 0.818
Dalk_5280
UDP-3-0-acyl N-acetylglucosamine deacetylase; Zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; IMG reference gene:2503011040; PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase.
 
  
 0.805
Dalk_0350
PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dol:Dole_1433 tetraacyldisaccharide 4'-kinase; IMG reference gene:2503006047; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase).
 
   
 0.803
Dalk_3702
PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dol:Dole_1762 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; IMG reference gene:2503009446; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase).
 
   
 0.797
Dalk_1794
KEGG: dol:Dole_2837 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; IMG reference gene:2503007505; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase.
 
   
 0.793
Dalk_1760
PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: dol:Dole_1950 prephenate dehydratase; IMG reference gene:2503007471; PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II.
 
  
 0.785
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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