STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1797PFAM: glycosyl transferase family 2; KEGG: aba:Acid345_0505 glycosyl transferase, family 2; IMG reference gene:2503007508; PFAM: Glycosyl transferase family 2. (242 aa)    
Predicted Functional Partners:
Dalk_1807
PFAM: glycosyl transferase family 2; KEGG: lbf:LBF_4116 bifunctional glycosyltransferase/sugar pyrophosphorylase; IMG reference gene:2503007518; PFAM: Glycosyl transferase family 2.
 
 0.813
Dalk_1796
KEGG: dol:Dole_2836 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; IMG reference gene:2503007507; PFAM: ABC transporter transmembrane region; ABC transporter; TIGRFAM: lipid A export permease/ATP-binding protein MsbA.
  
  
 0.755
Dalk_1794
KEGG: dol:Dole_2837 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; IMG reference gene:2503007505; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase.
     
 0.753
Dalk_0014
PFAM: glycosyl transferase family 2; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pph:Ppha_1002 radical SAM domain protein; IMG reference gene:2503005709; PFAM: Radical SAM superfamily; Glycosyl transferase family 2.
 
  
 0.736
Dalk_1795
PFAM: protein of unknown function DUF374; KEGG: afe:Lferr_0647 protein of unknown function DUF374; IMG reference gene:2503007506; PFAM: Domain of unknown function (DUF374).
       0.732
Dalk_1793
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: dol:Dole_2838 oxidoreductase domain-containing protein; IMG reference gene:2503007504; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
     
 0.668
Dalk_1792
PFAM: protein of unknown function DUF1009; KEGG: dol:Dole_2839 hypothetical protein; IMG reference gene:2503007503; PFAM: Protein of unknown function (DUF1009).
       0.640
Dalk_5269
PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2418 TPR repeat-containing protein; IMG reference gene:2503011029; PFAM: Tetratricopeptide repeat.
 
 
 0.626
Dalk_3255
Similar to related glycosyltransferase of the PMT family; KEGG: sus:Acid_1421 glycosyl transferase family protein; IMG reference gene:2503008985.
 
 
 0.614
Dalk_1696
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: jan:Jann_4246 NAD-dependent epimerase/dehydratase; IMG reference gene:2503007406; PFAM: NAD dependent epimerase/dehydratase family.
 
 
  0.611
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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