STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1962PFAM: PfkB domain protein; KEGG: dol:Dole_2854 ribokinase-like domain-containing protein; IMG reference gene:2503007679; PFAM: pfkB family carbohydrate kinase. (330 aa)    
Predicted Functional Partners:
Dalk_1336
PFAM: oxidoreductase domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: vvy:VV0357 putatve zinc-binding dehydrogenase; IMG reference gene:2503007040; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Zinc-binding dehydrogenase.
  
 
 0.892
Dalk_2837
Adenylosuccinate synthase; Catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; IMG reference gene:2503008561; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase.
  
 0.874
Dalk_0117
GMP synthase, large subunit; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; IMG reference gene:2503005812; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit.
  
 
 0.862
Dalk_0459
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cpb:Cphamn1_1499 xylose isomerase domain protein TIM barrel; IMG reference gene:2503006159; PFAM: Xylose isomerase-like TIM barrel.
  
 
 0.846
Dalk_1490
KEGG: pca:Pcar_1794 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; IMG reference gene:2503007200; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
    
 0.836
Dalk_3078
TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: dol:Dole_2154 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; IMG reference gene:2503008807; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
  
  
 0.836
Dalk_0556
Ribulose-5-phosphate-epimerase; PFAM: ribulose-phosphate 3-epimerase; KEGG: dol:Dole_2229 ribulose-phosphate 3-epimerase; IMG reference gene:2503006257; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase.
  
 0.821
Dalk_1961
PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: dol:Dole_0346 hypothetical protein; IMG reference gene:2503007678; PFAM: Bacterial SH3 domain.
 
     0.810
Dalk_0887
Amylo-alpha-16-glucosidase; PFAM: alpha amylase catalytic region; Amylo-alpha-16-glucosidase; SMART: alpha amylase catalytic sub domain; KEGG: sat:SYN_00295 glycogen debranching enzyme/alpha-amylase; IMG reference gene:2503006588; PFAM: Amylo-alpha-1,6-glucosidase; Glycogen debranching enzyme N terminal; Alpha amylase, catalytic domain; TIGRFAM: glycogen debranching enzyme, archaeal type, putative.
 
  
 0.764
Dalk_3447
KEGG: sfu:Sfum_0006 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); IMG reference gene:2503009179; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein.
  
 
  0.764
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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