STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2000KEGG: sfu:Sfum_2791 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Helix-hairpin-helix DNA-binding class 1; Toprim sub domain protein; IMG reference gene:2503007717; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR. (199 aa)    
Predicted Functional Partners:
Dalk_1999
PFAM: conserved hypothetical protein; KEGG: dol:Dole_0541 hypothetical protein; IMG reference gene:2503007716; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family.
 
  
 0.988
Dalk_0046
TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: dol:Dole_1709 DNA repair protein RecO; IMG reference gene:2503005741; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO.
 
 
 0.966
Dalk_1998
KEGG: dol:Dole_0542 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; IMG reference gene:2503007715; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau.
  
 0.912
Dalk_3821
dTMP kinase; PFAM: thymidylate kinase; KEGG: dol:Dole_1165 dTMP kinase; IMG reference gene:2503009565; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase.
    
 0.866
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
   
   0.824
Dalk_0024
KEGG: dol:Dole_3206 DNA polymerase III, delta prime subunit; IMG reference gene:2503005719; PFAM: DNA polymerase III, delta subunit, C terminal; TIGRFAM: DNA polymerase III, delta' subunit.
  
 0.795
Dalk_2001
PFAM: protein of unknown function UPF0153; KEGG: dol:Dole_0539 hypothetical protein; IMG reference gene:2503007718; PFAM: Uncharacterised protein family (UPF0153).
  
    0.759
Dalk_3312
KEGG: dol:Dole_2079 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; IMG reference gene:2503009042; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD.
     
 0.707
Dalk_0025
PFAM: PSP1 domain protein; KEGG: dol:Dole_3205 PSP1 domain-containing protein; IMG reference gene:2503005720; PFAM: PSP1 C-terminal conserved region.
      0.703
Dalk_4585
TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: pth:PTH_2885 replicative DNA helicase; IMG reference gene:2503010341; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase.
 
   
 0.659
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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