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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2005TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dol:Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ; IMG reference gene:2503007722; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ. (250 aa)    
Predicted Functional Partners:
Dalk_2003
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dol:Dole_2022 cobalamin (vitamin B12) biosynthesis CbiM protein; IMG reference gene:2503007720; PFAM: Cobalt uptake substrate-specific transmembrane region.
 
 0.999
Dalk_2006
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1938 ABC transporter related; IMG reference gene:2503007723; PFAM: ABC transporter.
 
 0.999
Dalk_0378
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_1750 cobalt ABC transporter, ATPase subunit; IMG reference gene:2503006075; PFAM: ABC transporter.
  
 0.987
Dalk_2002
KEGG: dol:Dole_2023 hypothetical protein; IMG reference gene:2503007719; PFAM: Nickel uptake substrate-specific transmembrane region.
 
  
 0.984
Dalk_2385
PFAM: ABC-3 protein; KEGG: pcu:pc1807 putative zinc ABC transporter membrane protein; IMG reference gene:2503008105; PFAM: ABC 3 transport family.
    
 0.970
Dalk_4065
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mma:MM_1996 cobalt transport ATP-binding protein; IMG reference gene:2503009810; PFAM: ABC transporter.
  
 0.967
Dalk_0265
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: gtn:GTNG_0477 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; IMG reference gene:2503005961; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain.
  
 0.962
Dalk_0966
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: gtn:GTNG_3281 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; IMG reference gene:2503006667; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain.
  
 0.962
Dalk_2004
KEGG: dol:Dole_2021 hypothetical protein; IMG reference gene:2503007721.
 
     0.959
Dalk_0377
PFAM: BioY protein; KEGG: sfu:Sfum_1749 BioY protein; IMG reference gene:2503006074; PFAM: BioY family.
  
 0.957
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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