STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2050PFAM: peptidase M48 Ste24p; KEGG: ppd:Ppro_3569 peptidase M48, Ste24p; IMG reference gene:2503007767; PFAM: Peptidase family M48. (310 aa)    
Predicted Functional Partners:
Dalk_0505
KEGG: dol:Dole_1575 hypothetical protein; IMG reference gene:2503006205; PFAM: Dynamin family.
     
 0.906
Dalk_1010
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: sat:SYN_02837 flagellar motor switch protein; IMG reference gene:2503006711; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.
    
   0.670
Dalk_4272
KEGG: dol:Dole_3044 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; IMG reference gene:2503010020; PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH.
  
 
 0.670
Dalk_3616
PFAM: GrpE protein; KEGG: pca:Pcar_0108 heat shock protein nucleotide exchange factor GrpE; IMG reference gene:2503009348; PFAM: GrpE.
  
  
 0.604
Dalk_0132
PFAM: protein of unknown function UPF0005; KEGG: dol:Dole_1724 hypothetical protein; IMG reference gene:2503005827; PFAM: Uncharacterised protein family UPF0005.
  
  
 0.590
Dalk_4702
TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; KEGG: pca:Pcar_2611 peptide methionine sulfoxide reductase; IMG reference gene:2503010458; PFAM: SelR domain; Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; methionine-R-sulfoxide reductase.
  
  
 0.525
Dalk_1139
Molecular chaperone GrpE (heat shock protein)-like protein; KEGG: cac:CAC0471 GrpE protein HSP-70 cofactor; IMG reference gene:2503006841; PFAM: GrpE.
  
  
 0.522
Dalk_2051
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pha:PSHAa2481 enoyl-CoA hydratase; IMG reference gene:2503007768; PFAM: Enoyl-CoA hydratase/isomerase family.
       0.512
Dalk_1936
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: sfu:Sfum_0501 isoprenylcysteine carboxyl methyltransferase; IMG reference gene:2503007653; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family.
    
 0.503
Dalk_2434
KEGG: ote:Oter_4173 putative integral membrane protein; IMG reference gene:2503008155.
    
 0.503
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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